Journal of Computational Science & Engineering
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Annual Index
  Policies & Practices

Policies & Practices

  •  Subject Areas
  •  Content of Articles
  •  Short Papers
  •  Editorial Procedures
  •  Author Appeals
  •  Receipt Dates
  •  Author Inquiries

Subject Areas

Papers are categorized into the following subsections:
  •     Scientific Computing: Computational Biology, Genomics and Bioinformatics, Bioengineering, Brain Mapping, Compilers, Digital Graphics, Environmental Modeling,  Computational Chemistry and Physics, Databases, Data Mining, Decision Sciences, Digital Libraries, Drug Design etc.

  •   Mathematical Models and Algorithms: Modeling and Simulation, Advanced Numerical Algorithms,  Web- and Grid-based Simulation and Computing, Hybrid Computational Methods, New Algorithmic Approaches to Computational Kernels and Applications

  •     Parallel and Distributed Computing and Large Scale Scientific Instruments
  •     Computational Humanities and Education in Computational Science
  • If a manuscript submitted to JCSE is on a topic not within its purview, the editors will transfer the paper to the appropriate journal and inform the author(s) of that transfer.

    Content of Articles

    The JCSE publishes new results. Thus, prior publication of the same results generally will preclude consideration of a later paper.
    Confirmation of previously published results of unusual importance can be considered as new, as can significant null results. Papers advancing new theoretical views on fundamental principles or theories must contain convincing arguments that the new predictions and interpretations are distinguishable from existing knowledge, at least in principle, and do not contradict established experimental results. In general, authors should keep review material to a minimum. Even so, some review and reprise of past work are appropriate if the paper is made more understandable and self-contained thereby.
    Papers should be clearly written in good scientific English, in a style consistent with that of the journal. Special attention should be paid to readability, so as to render papers understandable to readers outside a narrow specialty.
    Files are made freely available via the World Wide Web. As an electronic service, JCSE can accommodate color-figure, multimedia, and program files.
    Readers benefit from complete referencing, which is necessary to place any work in the context of the current state of research. Authors should therefore make every effort to ensure that their citations of previously published work are comprehensive at the time of submission. This includes references to books and to published conference proceedings that contain more than abstracts. Authors should also add to the references any works published during the course of the review process.
    It may also be necessary for authors to cite unpublished work, such as e-prints, preprints, internal reports, or results which have been reported only orally at meetings. Unpublished work that appears during the review process may require citation as well. Unpublished work has not been fully vetted by the community, and considerable judgment on the part of the editors will be employed in determining the need to cite such work.
    Papers that describe proposed experiments fall into a special category. For such papers to be acceptable, the experiments must be demonstrated to be novel and feasible. It is the authors responsibility to show that their proposal is likely to stimulate research that might not otherwise be undertaken.
    Material previously published in an abbreviated form (in a Letters journal, as a Rapid Communication, or in conference proceedings) may provide a useful basis for a more detailed article in the JCSE. Such an article should present considerably more information and lead to a substantially improved understanding of the subject. Reproduction of figures, tables, and text material that have been published previously should be kept to a minimum and must be properly referenced. In order to reproduce figures, tables, etc., from another journal, authors must show that they have complied with the copyright requirements of the publisher of the other journal. Publication of material in a thesis does not preclude publication of appropriate parts of that material in the JCSE.

    Short Papers

    JCSE publishes Articles, Rapid Communications, Brief Reports, and Comments. The scientific content of all sections of the Journal is judged by the same criteria.
    The sections are distinguished by the different purposes for which the papers are intended.
    Each paper must have an abstract. Short papers are limited to four journal pages; exceptions will be considered for Comments. For information on how to estimate length, see the information available on the Authors.
    Rapid Communications in JCSE are intended for the accelerated publication of important new results. Authors may follow a Rapid Communication (or a Letter) with a more complete account as a regular article in JCSE. The Letters are aimed at a general audience of allied scientists, while rapid communications are primarily for a more specialized audience. Rapid communications are given priority in editorial processing and production to minimize the time between receipt and publication. Therefore authors should justify the need for priority handling in their letter of submittal.
    A Brief Report is an account of completed research that meets the usual JCSE standards of scientific quality but is not appropriate for a regular article. Announcements of planned research, progress reports, and preliminary results are generally not suitable for publication as brief reports. The normal publication schedule is followed. Addenda are included in the brief reports section.
    Comments are publications that criticize or correct papers of other authors previously published in JCSE. Each comment should contain an abstract and should state clearly the paper to which it refers. To be considered for publication, a comment must be written in a collegial tone (free from polemics) and must be pertinent and without egregious errors. A reply to a comment must also conform to these requirements. Editorial procedures for processing comments are described in the following section.
    The Errata section contains notices regarding errors or omissions in papers previously published. Besides the standard erratum, several special categories of documents may appear in this section. In the online journal, each of these documents involve bidirectional links between the original article and the document in the errata section. The category of the corrective document is indicated in its title and in the link from the original article.
    The standard erratum is a statement by the authors of the original paper that briefly describes the correction(s) and, where appropriate, any effects on the conclusions of the paper.
    An Editorial Note is a statement by the journal about the paper that the editors feel should be brought to the attention of readers of the article.
    A Publishers Note is a notice that the article has been corrected subsequent to publication. Such corrections are made to correct typographical or production errors that involve significant metadata (such as title or byline) or have a significant impact on the readers ability to understand the article. Such corrections are normally made only shortly after publication, with approval of JCSE management, and are not made for scientific errors or omissions. The Publishers Note indicates the correction and when it was made.
    A Retraction is a notice that the paper should not be regarded as part of the scientific literature. Possible reasons for this include, among others, presentation of invalid results and inclusion of results that were published previously by the same authors in substantially similar form. (In the latter case, the prior publication, not the Retracted article, should be regarded as the source of the information.) To protect the integrity of the record, the retracted article is not removed from the online journal, but notice of Retraction is given. Retractions are sometimes published by the authors when they have discovered substantial scientific errors; in other cases, the editors conclude that Retraction is appropriate. In all cases, the Retraction indicates the reason for the action and who is responsible for the decision. If a Retraction is made without the unanimous agreement of the authors, the approval of the Editor-in-Chief of JCSE is required.

    Editorial Procedures

    Usually one referee is selected initially by the editors for each manuscript; there are exceptions, as with almost all procedural matters discussed below. In most cases, directly submitted Rapid Communications are initially sent to two referees. Referee reports are advisory to the editors, but are generally transmitted by the editors to the authors, and so should be written in a collegial manner. The editors may withhold or edit these reports for cause. If in the judgment of the editors a paper is clearly unsuitable for JCSE, it will be rejected without external review; authors of such papers have the same right to appeal as do other authors.
    Any resubmittal should be accompanied by a summary of the changes made, and a brief response to all recommendations and criticisms. This material will normally be forwarded to reviewers, and so should be written in a collegial manner. Remarks that authors wish to address solely to the editors should be clearly identified and separated from the summary and response. Authors should not send a version of the manuscript marked to show the changes, as this can lead to confusion and delay in processing.
    A manuscript may be sent to additional referees if warranted, either by request of the authors or by editorial decision. In most cases the new referee will be provided with previous correspondence on the manuscript, but not with the identity of the previous referee(s). Editorial Board members, however, may receive this information.
    Since the referee is usually best qualified to judge a paper, the author should direct his or her responses to the items raised in the referee report. In general, very long rebuttal letters explaining contentious points in a manuscript should be avoided in favor of clarifying alterations in the manuscript itself.
    Papers are accepted for publication based on favorable recommendations by the referee(s). On the other hand, the editors can and will seek additional opinions when in their judgment such action seems called for. It is the policy of this Journal that every effort be made to arrive at a decision on disposition within a reasonable time.
    After acceptance of a manuscript, if further information that seems to warrant investigation is received, the editors will regard it as an obligation to reconsider their decision.
    Authors should state whether the paper they submit has been previously considered for publication in any of journals and supply the code number assigned by that journal. They should also provide information about other recent relevant unpublished work of theirs.
    When a manuscript has several authors, one of them, the corresponding author, should be designated to receive and respond to correspondence from the editors. This designation can be changed upon notification of the editors. It is the responsibility of the corresponding author to represent all those involved with the work reported.
    By submitting the manuscript, the corresponding author certifies:
    •      The paper represents original work of the listed authors.
    •      The manuscript as presented accurately reflects the scientific results.
    •      All of the authors made significant contributions to the concept, design, execution, or interpretation of the research study.
    •      All those who made significant contributions were offered the opportunity to be listed as authors.
    •      All of the listed authors are aware of and agree to the submission of this manuscript.
    •      The manuscript has not been published, and is not now and will not be under consideration by another journal while it is considered here.
    •      As part of the submission, the authors have provided any relevant information to the editors (e.g., information about recent relevant unpublished manuscripts by the authors).
    •      The authors accept the established procedures for selecting manuscripts for publication.
    Authors may not present data and other results obtained by others as if they were their own. Nor may authors incorporate without attribution text from another work (by themselves or others), even when summarizing past results or background material. If a direct quotation is appropriate, the quotation should be clearly indicated as such and the original source should be properly cited. Papers that have been found to be in violation of this rule will be rejected. In such cases, resubmission of the manuscript, even with the plagiarized text removed, is not ordinarily allowed. However, the editors may allow exceptions to this policy if warranted by special circumstances.
    Authors may request that particular individuals not be chosen as referees. Such requests are usually honored, although it is customary to give authors whose work is criticized in a manuscript an opportunity to respond to the criticism. Authors are welcome to submit a list of experts whom they consider especially suited to referee their paper. Such a list is particularly useful when a manuscript treats a highly specialized subject on which papers are infrequently published. The editors, however, are not constrained to select a referee from that list.
    In some circumstances information about a manuscript considered by JCSE and subsequently submitted to another journal may be provided to the editor of that journal. Such information might include the comments and identities of referees.
    Comments, papers which criticize or correct the work of other authors previously published in JCSE, are processed according to the following procedure:
    (1) The paper is first sent to the author(s) whose work is being criticized. These authors act as reviewers (usually not anonymously) and should provide a report (not a Reply) suitable for transmittal to the author(s) of the Comment.
    (2) After suitable exchanges between the involved parties, the Comment, along with relevant correspondence, is sent to an uninvolved referee for anonymous review. If on the basis of this referees (and possibly other reviewers) recommendation the editors decide to accept the Comment for publication, then the authors whose work is being commented on are given the opportunity to write a Reply for possible simultaneous publication. This Reply will also be reviewed, usually by the same uninvolved referee.
    (3) After the Comment and Reply have been accepted for publication, the author of the Comment is sent a copy of the Reply for his or her information, but should not alter the Comment unless requested to do so by the editors. The Comment and Reply usually are published in the same issue of the journal, with the Reply immediately following the Comment. If there is undue delay in the preparation and review of the Reply, the Comment may be published before the Reply.

    Author Appeals

    Authors may appeal a rejection of their paper by the editors. In the case of a formal appeal, the paper and all relevant information, including the identities of the referees, will be sent to a member of the Editorial Board. The Board member may review the case on the existing record or may seek additional expert opinion. The Board member will present an advisory opinion to the editors, which will be sent to authors and/or referees with the Board members name.
    If a Board member has provided a referee report on a paper prior to appeal, another Board member must review the paper on appeal. Authors may suggest those Board members they feel are appropriate (or not appropriate) to conduct the review, but the editors are not bound by such suggestions. If there is no suitable Board member available, the editors may appoint an appropriate scientist to consider a paper under appeal as an Board member.
    The author of a paper that has been rejected subsequent to an Editorial Board review may request that the case be reviewed by the Editor-in-Chief of the JCSE. This request should be addressed to the Editor, who will forward the entire file to the Editor-in-Chief. Such an appeal must be based on the fairness of the procedures followed, and must not be a request for another scientific review.
    Receipt Dates
    Each paper, when published, carries a receipt date indicating when the manuscript was first received by the editors of JCSE.
    If authors make substantive changes in a manuscript or if they hold it for an unusually long time after it has been returned to them with a referees report, the paper will be given a "revised manuscript receipt date." In such cases, the authors may be required to revise references to include material published since the original submission of the manuscript. In cases of especially lengthy delays the original paper is considered withdrawn, and the resubmitted version is considered to be a new paper and is given a new receipt date. For papers that have been accepted for publication and sent to production, information about their status in the production process is available via a similar service maintained by the production vendor.  The editors welcome suggestions from authors and referees regarding improvements in editorial and refereeing procedures.